Version 0.99.0 Pre-BioC submission Version 0.99.1 Changed GTF reading to use rtracklayer::import Version 0.99.2 Changed VignetteEngine so vignette can be built Version 0.99.3 Removed pdf Version 0.99.4 Changed Vignette to .Rnw to generate BiocStyle output Version 0.99.5 UTF8 encoding in vignette to pass build Version 0.99.6 depends R>3.4 Version 0.99.7 Branchpointer now is based upon the GRanges object class. Several functions have been combined and made into helper functions. Naming conventions of variables is consistent. Version 0.99.8-0.99.9 Updated functions to use GRanges accessor functions Version 0.99.10-0.99.13 Updated functions Version 1.3.0 Improved speed for functions Functions combined and renamed Updated model to single gbm Bug fixes Version 1.3.1 Version Bump